--- title: "Amplicon Sequencing & Metabarcoding Services | Biomcare" description: "Targeted microbiome profiling with 16S, ITS2 and other marker genes. Short and long-read platforms. 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[Home ](/) 2. [Services](/services) 3. Amplicon Sequencing # Amplicon Sequencing for Microbiome Profiling Targeted sequencing of bacteria, fungi and other microbial groups [Request a quote](/contact-biomcare) Amplicon sequencing is often the most practical starting point when you need to understand which microorganisms are present in a sample. The method targets a selected marker gene, such as 16S rRNA for bacteria or ITS2 for fungi, and uses that region to profile the microbial community. At Biomcare, we provide amplicon sequencing as a standalone sequencing service or as part of a broader microbiome project with bioinformatics, statistical analysis and reporting. Some customers only need high-quality sequencing data. Others need support all the way from study design and sample handling to interpretation of the results. We can support both workflows. ## When amplicon sequencing is a good fit Amplicon sequencing is relevant when your project is focused on a defined microbial group and you need a cost-effective way to compare samples. It is often used for: - bacterial profiling with 16S rRNA sequencing - fungal profiling with ITS sequencing - 18S or other marker-based approaches - soil, root, water, plant, gut, stool, skin, biopsy or bioreactor samples - microbial diversity studies - treatment comparisons - before-and-after studies - projects where low microbial biomass or high host/background DNA makes targeted sequencing preferable Because amplicon sequencing targets a specific genetic region, it can be a strong choice when you want focused taxonomic profiling rather than broad whole-DNA sequencing. ## What we offer Marker genes 16S rRNA, ITS2, 18S rRNA and other marker regions on request Sequencing platforms Short-read sequencing, including Illumina, and long-read approaches such as Oxford Nanopore or PacBio where relevant Typical outputs Raw FASTQ files, quality-filtered data, taxonomic abundance tables and optional diversity analyses Sample types Soil, water, plant, root, gut/stool, skin, blood, sputum, biopsies, cultures and bioreactor samples Optional add-ons DNA extraction, qPCR or spike-in based absolute quantification, bioinformatics, statistics and reporting ## What you get For pure sequencing projects, we can deliver the sequencing workflow and raw data files for your own downstream analysis. For projects where you want Biomcare to handle the analysis, we can also provide: - quality evaluation and filtering - taxonomic annotation - abundance tables - alpha and beta diversity analysis - statistical comparison between groups or conditions - figures, tables and project reports ## Not sure if amplicon sequencing is enough? Amplicon sequencing is a strong method for targeted microbial profiling, but it is not always the right answer. If your project requires functional profiling, genes, pathways or broader cross-kingdom analysis, shotgun metagenomic sequencing may be a better fit. Tell us about your sample type, project aim and desired output, and we will help you select the right sequencing approach. ## Request a sequencing quote Send us a short description of your project, including sample type, number of samples, target organism group and whether you need raw data only or downstream analysis. [Request a quote](/contact-biomcare) ## Related resources [ ### DNA/RNA & Sequencing Solutions Overview of sequencing platforms, workflows and DNA/RNA extraction options at Biomcare. Learn more ](/dna-rna-sequencing-solutions)[ ### Shotgun Metagenomic Sequencing Whole-DNA sequencing for functional profiling, genes, pathways and cross-kingdom analysis. Learn more ](/services/shotgun-metagenomic-sequencing) [Back to All Services](/services) ![Biomcare](data:image/png;base64,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) Leading microbiome research partner delivering cutting-edge DNA sequencing, bioinformatics, and consulting services for agriculture and life sciences. 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